DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sodh-1 and CG17221

DIOPT Version :9

Sequence 1:NP_001287203.1 Gene:Sodh-1 / 40836 FlyBaseID:FBgn0024289 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001259984.1 Gene:CG17221 / 33521 FlyBaseID:FBgn0031500 Length:413 Species:Drosophila melanogaster


Alignment Length:396 Identity:88/396 - (22%)
Similarity:142/396 - (35%) Gaps:91/396 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LHG---IEDMRL-EQRPIPEI-ADDEVLLAMDSVGICGSDVHYLAHGRIGDFVLTK--------- 60
            ||.   |::::| |...||:| ..:|.|:.:.:..:...|:..|.  ..|..||.|         
  Fly    57 LHNYGDIDELQLSEMLKIPQIRCSNECLVRIRATAVNPIDLAMLR--GYGATVLNKMRCQPGDGI 119

  Fly    61 --PMIIGHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCDHCKQGKYNLCPGMVFCATPPYDG 123
              |:|:|.|..|.:.:.|..| :|.:|.||.   ||...:.......:|...|.  :|..|    
  Fly   120 EFPLILGREFCGELVQTGMGV-SLPLGSRVW---GVVPLQATIGSHAEYVAVPS--YCLAP---- 174

  Fly   124 NLTRYYKHAADFCFKLPDHVTMEEGALLEPLSVGVHACKRAEVTLG----------------SKV 172
                           .|..:...|.|.:  |..|:.|.....:|.|                .:|
  Fly   175 ---------------APKELDDYEAASV--LYAGLTAWSGLYITGGLGGPCGATTASGGGAHKRV 222

  Fly   173 LILGAGPIGLVTLMAAQAMGASEI-LITDLVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKT 236
            |:||..  |.|..:|.|.:.:.:: ::....:..:::.:.|||...:.....|..||....... 
  Fly   223 LVLGGS--GGVGTLAIQILKSQKVQVLATCSENAIEMVRNLGADLVVDYNNPQAMEELCKYAPY- 284

  Fly   237 MGGQPDKSIDCCG------AESSARLAIFATRSGGIVVVV-----GMGAAEIKLPLINALAREVD 290
                 |..:||.|      |||......:.|.|..::..:     |:||.:....|.....|.|.
  Fly   285 -----DIVLDCAGQGGQKAAESKYDFRQYITFSSPLLANIDKQGLGVGALKNVFDLFQTNVRSVT 344

  Fly   291 IRGVFRYCNDYAAA-------LALVASGKVNVKRLVTHHFDIKETAKAFETSRKG-LGGAIKVMI 347
            .||.......::.|       ..||...|  :..|:...:...|..||||..:.| |.|.|.|.:
  Fly   345 QRGGLVKWGFFSPAPQGIQFLQKLVEQRK--LMPLIDSSYGFSELPKAFEKMKSGHLRGKIVVKL 407

  Fly   348 HVQPRD 353
            ..:..|
  Fly   408 REETGD 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sodh-1NP_001287203.1 PLN02702 4..346 CDD:215378 86/387 (22%)
sorbitol_DH 8..349 CDD:176188 87/390 (22%)
CG17221NP_001259984.1 RTN4I1 52..406 CDD:176210 86/387 (22%)
Qor 52..406 CDD:223677 86/387 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445845
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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