DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sodh-1 and sodh-1

DIOPT Version :9

Sequence 1:NP_001287203.1 Gene:Sodh-1 / 40836 FlyBaseID:FBgn0024289 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_505991.1 Gene:sodh-1 / 179627 WormBaseID:WBGene00010790 Length:349 Species:Caenorhabditis elegans


Alignment Length:338 Identity:89/338 - (26%)
Similarity:144/338 - (42%) Gaps:47/338 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 MRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAHGRIGDF--VLTKPMIIGHESAGVVAKLGKK 78
            :.:.|.|:|..||||:|:.::..|||.||:|..    :||.  :...|::.|||.||.|.::||.
 Worm    21 LEVRQVPVPSPADDEILVKIEYSGICHSDLHVW----LGDLKDMSVCPLVGGHEGAGSVVQIGKN 81

  Fly    79 VTTLKVGDRVAIE-PGVPCRKCDHCKQGKYNLC---PGMVFCATPPYDGNLTRYYKHAADFCFKL 139
            ||..::||:..:: ....|..|:.||:|...||   ....|..:..:...||.....||    |:
 Worm    82 VTGWQLGDKAGVKLMNFNCLNCEFCKKGHEPLCHHIQNYGFDRSGTFQEYLTIRGVDAA----KI 142

  Fly   140 PDHVTMEEGALLEPLSVGVH-ACKRAEVTLGSKVLILGA-GPIGLVTLMAAQAMGASEILITDLV 202
            .....:...|.:....|.|: |.|.:.|..|..:::.|| |.:|.:.:..|.||| ..::..|..
 Worm   143 NKDTNLAAAAPILCAGVTVYKALKESNVAPGQIIVLTGAGGGLGSLAIQYACAMG-MRVVAMDHG 206

  Fly   203 QQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGAESSARLAIFATRSGGIV 267
            .:... .|.|||  ...:...:|.:..:.:.:.|.|| |...|:...|......|:...|..|.|
 Worm   207 SKEAH-CKGLGA--EWFVDAFETPDIVSHITKLTEGG-PHGVINFAVARKPMEQAVEYVRKRGTV 267

  Fly   268 VVVGM---------------GAAEIKLPLINAL-----AREVDIRGVFRY------CNDYAAALA 306
            |.||:               .|..||..::.:.     |.|...||:.:.      ..|..|...
 Worm   268 VFVGLPKDSKVTFDTTPFIFNAITIKGSIVGSRLDVDEAMEFVTRGIVKVPLELVKLEDVPAVYQ 332

  Fly   307 LVASGKVNVKRLV 319
            .:..||:|.:.:|
 Worm   333 RMLDGKINSRAVV 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sodh-1NP_001287203.1 PLN02702 4..346 CDD:215378 89/338 (26%)
sorbitol_DH 8..349 CDD:176188 89/338 (26%)
sodh-1NP_505991.1 AdhP 6..348 CDD:223992 89/338 (26%)
CAD3 9..347 CDD:176257 89/338 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D605481at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.