DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sodh-1 and R04B5.6

DIOPT Version :9

Sequence 1:NP_001287203.1 Gene:Sodh-1 / 40836 FlyBaseID:FBgn0024289 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_505590.1 Gene:R04B5.6 / 179404 WormBaseID:WBGene00011004 Length:347 Species:Caenorhabditis elegans


Alignment Length:348 Identity:175/348 - (50%)
Similarity:258/348 - (74%) Gaps:2/348 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKDNLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAHGRIGDFVLTKPMIIG 65
            |::|||:|||:||.|:||||.||.:....:||:.:::|||||||||:|.||.||.||:.:||::|
 Worm     1 MSQDNLSAVLYGINDLRLEQAPISKPGPRQVLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVLG 65

  Fly    66 HESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCDHCKQGKYNLCPGMVFCATPPYDGNLTRYYK 130
            |||:|||:::|.:|...|||||:|:|||:||:.|:|||.|:|||||.|.|.||||.:|.|:|:..
 Worm    66 HESSGVVSEIGSEVKGFKVGDRIAMEPGLPCKLCEHCKIGRYNLCPDMRFFATPPVNGALSRFVV 130

  Fly   131 HAADFCFKLPDHVTMEEGALLEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASE 195
            |.|||||||||:::.|:|||||||||.:.||:|..|.:|.|:|:|||||||::.|:.|:|:|||:
 Worm   131 HDADFCFKLPDNLSFEDGALLEPLSVAIQACRRGTVQMGQKILVLGAGPIGVLNLLTAKAIGASK 195

  Fly   196 ILITDLVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGAESSARLAIFA 260
            ::||||..:||.:|:.|||..|:.:...::.|..:.:::.....||..||:|.|.:.....||..
 Worm   196 VVITDLNDERLALARLLGADATINVMGKRSDEVRSEIIKAFGDQQPHVSIECTGVQPCVETAIMT 260

  Fly   261 TRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCNDYAAALALVASGKVNVKRLVTHHFDI 325
            |||||:||:||:||..:::|||.:..||||:||.||..|.|:.|:.|::|||:::..|...|:.:
 Worm   261 TRSGGVVVLVGLGAERVEIPLIQSPTREVDLRGTFRSANCYSTAIELISSGKLDLSGLTRAHYKL 325

  Fly   326 KETAKAFETSRKGLGGAIKVMIH 348
            :|:.:||:.::.  |..|||.||
 Worm   326 EESLEAFKRTQN--GDVIKVFIH 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sodh-1NP_001287203.1 PLN02702 4..346 CDD:215378 171/341 (50%)
sorbitol_DH 8..349 CDD:176188 171/341 (50%)
R04B5.6NP_505590.1 sorbitol_DH 7..347 CDD:176188 171/342 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158387
Domainoid 1 1.000 157 1.000 Domainoid score I2533
eggNOG 1 0.900 - - E1_COG1063
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56080
Inparanoid 1 1.050 379 1.000 Inparanoid score I1197
Isobase 1 0.950 - 0 Normalized mean entropy S593
OMA 1 1.010 - - QHG56613
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001480
OrthoInspector 1 1.000 - - mtm4792
orthoMCL 1 0.900 - - OOG6_100349
Panther 1 1.100 - - O PTHR43161
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R311
SonicParanoid 1 1.000 - - X751
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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