DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Antp and nkx2.1

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_571851.1 Gene:nkx2.1 / 81883 ZFINID:ZDB-GENE-010404-1 Length:346 Species:Danio rerio


Alignment Length:213 Identity:60/213 - (28%)
Similarity:81/213 - (38%) Gaps:57/213 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 GSP------PLVDQ--MSGHHMNAQMTLP--HHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQ 232
            |:|      |.|.|  |..|||....|:|  :||         |..||..:     :|..||.| 
Zfish    35 GAPLASYRQPQVTQAAMQQHHMGHNGTVPAAYHM---------TAAGVSQL-----SHTAMGGY- 84

  Fly   233 QQSGVPPVGAPPQGMMHQGQGPPQMHQGHPGQHTPPS---QNPN----------SQSSGMPSPLY 284
                       ..|.:......|....|..|..|..|   .||:          ..||||.....
Zfish    85 -----------CNGNLGNMSDLPAYQDGMRGSTTATSWYGTNPDPRFSTISRFMGSSSGMNMGSM 138

  Fly   285 PWMRS--QFGK------CQERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQI 341
            ..:.|  ..||      ...|::.|..:::.|..|||:.|...:||:...|..:|..:.||..|:
Zfish   139 STLSSLADVGKGMGPLTSTPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQV 203

  Fly   342 KIWFQNRRMKWKKENKTK 359
            ||||||.|.|.|::.|.|
Zfish   204 KIWFQNHRYKMKRQAKDK 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 37/158 (23%)
Homeodomain 298..354 CDD:459649 21/55 (38%)
nkx2.1NP_571851.1 Homeodomain 160..216 CDD:459649 21/55 (38%)

Return to query results.
Submit another query.