DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and Nkx6-1

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:360 Identity:80/360 - (22%)
Similarity:116/360 - (32%) Gaps:101/360 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YP-RFPPYDRMPYYNGQGMDQQQQHQVYSRPDSP--SSQVGGVMPQAQTN-GQLGVPQQQQQQQQ 117
            || .:||....|..:.......      |.|..|  :...||:.|.|... ..||.|        
  Rat    36 YPAAYPPLPTGPPSSSSSSSSS------SSPSPPLGAHNPGGLKPPAAGGLSSLGSP-------- 86

  Fly   118 QPSQNQQQQQAQQAPQQLQQQLPQ-VTQQVTHPQQQQQQPVVYASCKLQAAVGGLGMVPEGGSPP 181
                          ||||....|. :...::.|    ..||...:....|:       |.|.|..
  Rat    87 --------------PQQLSAATPHGINDILSRP----SMPVASGAALPSAS-------PSGSSSS 126

  Fly   182 LVDQMSGHHMN-----AQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQS--GVPP 239
            .....|....:     |..........|...|    .|:|..:.:.......|:|...|  .|..
  Rat   127 SSSSASATSASAAAAAAAAAAAAAASSPAGLL----AGLPRFSSLSPPPPPPGLYFSPSAAAVAA 187

  Fly   240 VGAPPQGMMHQGQGPPQMHQGHPGQHTPPSQNPNSQSSGMPSPLYPWMRSQFG-----------K 293
            ||..|:.:...                 |.:.|......|.||  ||..::..           |
  Rat   188 VGRYPKPLAEL-----------------PGRTPIFWPGVMQSP--PWRDARLACTPHQGSILLDK 233

  Fly   294 CQERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN-- 356
            ..:||..|.|::..|...|||.|...:||....|..:|::|.:||.|:|:||||||.||:|::  
  Rat   234 DGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAA 298

  Fly   357 --------------KTKGEPGSGGEGDEITPPNSP 377
                          :.||...:..:.|:...|..|
  Rat   299 EMATAKKKQDSETERLKGTSENEEDDDDYNKPLDP 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 29/162 (18%)
Homeodomain 298..354 CDD:459649 25/55 (45%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 28/138 (20%)
Repressor domain. /evidence=ECO:0000250 102..269 40/200 (20%)
Homeodomain 236..294 CDD:459649 26/57 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 5/39 (13%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 5/27 (19%)

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