DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and hoxc9

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001017256.1 Gene:hoxc9 / 550010 XenbaseID:XB-GENE-482330 Length:100 Species:Xenopus tropicalis


Alignment Length:79 Identity:48/79 - (60%)
Similarity:57/79 - (72%) Gaps:5/79 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 SPLYPWMRSQFGKCQERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 345
            :|:..|:.::    ..||: |..||:||||||||||.||.||||.||.|:|..|.|||||:||||
 Frog    21 NPVANWIHAR----STRKK-RCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWF 80

  Fly   346 QNRRMKWKKENKTK 359
            ||||||.||.||.|
 Frog    81 QNRRMKMKKMNKEK 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 6/24 (25%)
Homeodomain 298..354 CDD:459649 40/55 (73%)
hoxc9NP_001017256.1 Homeodomain 33..81 CDD:459649 34/48 (71%)

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