DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Antp and Lbx2

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001102714.1 Gene:Lbx2 / 500224 RGDID:1561172 Length:196 Species:Rattus norvegicus


Alignment Length:140 Identity:39/140 - (27%)
Similarity:58/140 - (41%) Gaps:35/140 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 QSGVPPVGAPPQGMMHQGQGPP------------QMHQGHPGQHTPPSQN------PNSQSSGMP 280
            :|.||  |||.:..:.:....|            :..|||..:...||:.      |....:|: 
  Rat    19 RSMVP--GAPSEPRLPEAGPDPASPLCALEELASKTFQGHSPRAPQPSEGRAVPEAPPGPGTGV- 80

  Fly   281 SPLYPWMRSQFGKCQERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 345
                          :.|::.|..:|..|.||||:.|.|.:||....|..:|..|.|...|:..||
  Rat    81 --------------RRRRKSRTAFTPQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWF 131

  Fly   346 QNRRMKWKKE 355
            ||||.|.|::
  Rat   132 QNRRAKLKRD 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 16/89 (18%)
Homeodomain 298..354 CDD:459649 23/55 (42%)
Lbx2NP_001102714.1 Homeodomain 84..140 CDD:459649 23/55 (42%)

Return to query results.
Submit another query.