DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and Nanog

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001094251.1 Gene:Nanog / 414065 RGDID:1303178 Length:312 Species:Rattus norvegicus


Alignment Length:177 Identity:41/177 - (23%)
Similarity:76/177 - (42%) Gaps:11/177 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 MNAQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQGQGPP 255
            |:..::.||.:  |..:..........:..||....|....|..:        .:.:..:...||
  Rat     1 MSVDLSGPHSL--PSCEEASNSGDSSPMPAVHLPEENYSCLQVSA--------TEMLCTETASPP 55

  Fly   256 QMHQGHPGQHTP-PSQNPNSQSSGMPSPLYPWMRSQFGKCQERKRGRQTYTRYQTLELEKEFHFN 319
            ......|.|.:| .|.||..:.||..:...|..:.:.....::::.|..:::.|...|:..|...
  Rat    56 PSSGDLPLQDSPDSSSNPKLKLSGPEADEGPEKKEENKVLTKKQKMRTVFSQAQLCALKDRFQRQ 120

  Fly   320 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEPGSGG 366
            |||:.::..:::..|.|:.:|:|.||||:|||.|:..|.:....|.|
  Rat   121 RYLSLQQMQDLSTILNLSYKQVKTWFQNQRMKCKRWQKNQWLKTSNG 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 20/115 (17%)
Homeodomain 298..354 CDD:459649 18/55 (33%)
NanogNP_001094251.1 Homeodomain 100..155 CDD:459649 18/54 (33%)
PTZ00395 <184..>291 CDD:185594
Blue background indicates that the domain is not in the aligned region.

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