DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and Lim1

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster


Alignment Length:195 Identity:49/195 - (25%)
Similarity:64/195 - (32%) Gaps:83/195 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 AQQMHHYSQNANHQGNMPYPRFP-----------------PYDRMPYYNGQGMDQQQQH----QV 82
            |::|..:..|.:..|....|.||                 |:|. ||:.|        |    ..
  Fly   320 ARKMRGFPMNLSPGGLDDGPGFPYFAADAKFEFGYGGPFHPHDG-PYFPG--------HPGGPMP 375

  Fly    83 YSRPDSPSSQVG--------GVMPQAQTNGQLGVP------------------------------ 109
            ::.|..|....|        |:.|:|...||.|.|                              
  Fly   376 FNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAA 440

  Fly   110 ----QQQQQQQQQPSQNQQQQQAQQAPQQLQQQLPQ-----------VTQQVTHPQQQQQQPVVY 159
                .||||||||..|.||||.||||..|.|||..|           .:...:.||..|.:.:|:
  Fly   441 QQQAAQQQQQQQQQQQQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANFSEPQNMQNEGLVW 505

  Fly   160  159
              Fly   506  505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360
Homeodomain 298..354 CDD:459649
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 1/3 (33%)
Homeodomain 248..304 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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