DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Antp and hoxd3a

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:215 Identity:78/215 - (36%)
Similarity:102/215 - (47%) Gaps:37/215 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 PHHMGHPQAQL--GYTDVGVP-DVTEVHQNHHNMGMYQQQSGVPPV---GAPPQGMMHQGQGPPQ 256
            |.|.|...:.:  .|.....| ..|.|.|..|..|........|..   .:.|:.:..|.|..| 
Zfish    28 PTHQGFSSSSIENDYQSPICPIQTTSVRQATHKNGDINGSCMRPSASQGNSQPESISEQQQAAP- 91

  Fly   257 MHQGHPGQHTPPSQ---NPNSQSSGMPSP-----LYPWMRS--QFGK------------CQER-- 297
            :....|...|..:|   :|:|..|...:|     ::|||:.  |..|            |.::  
Zfish    92 LAASSPSPSTNSTQKKKSPSSNGSSTATPVISKQIFPWMKETRQNAKQKSTNCPAAGETCDDKSP 156

  Fly   298 -----KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 357
                 ||.|..||..|.:||||||||||||.|.||:|:|:.|.||||||||||||||||:||:.|
Zfish   157 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 221

  Fly   358 TKGEPGSG-GEGDEITPPNS 376
            :||...|. |...:.:||.|
Zfish   222 SKGIMHSPLGHSPDRSPPLS 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 32/142 (23%)
Homeodomain 298..354 CDD:459649 40/55 (73%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 28/135 (21%)
COG5576 116..237 CDD:227863 54/120 (45%)
Antp-type hexapeptide 126..131 2/4 (50%)
Homeodomain 162..218 CDD:459649 40/55 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 8/23 (35%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.