DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and Nkx2-8

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001100202.1 Gene:Nkx2-8 / 299061 RGDID:1310629 Length:234 Species:Rattus norvegicus


Alignment Length:167 Identity:50/167 - (29%)
Similarity:77/167 - (46%) Gaps:22/167 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 QLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQGQGPPQMHQGHPGQHTPPSQN 271
            :||:|...:.::.|  |:.......:||:.||...|   .:..:....|...:.  |..|.|:.:
  Rat     6 RLGFTVRSLLNLPE--QDAQPRVRCEQQTCVPQTAA---WLESERSHYPSSDES--GLETSPADS 63

  Fly   272 PNSQSSGMPSPLYPWMRSQFGKCQERKRGRQT-YTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 335
            ....|.|..||         |...|::|.|:. :::.||||||:.|...|||:...|.::|..|.
  Rat    64 SQLASLGRASP---------GSDAEKRRKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLR 119

  Fly   336 LTERQIKIWFQNRRMKWKKENKTKGEPGSGGEGDEIT 372
            ||..|:||||||.|.|.|     :|......|..::|
  Rat   120 LTPTQVKIWFQNHRYKLK-----RGRAPGVTESSDVT 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 22/99 (22%)
Homeodomain 298..354 CDD:459649 26/56 (46%)
Nkx2-8NP_001100202.1 Homeodomain 82..138 CDD:459649 27/60 (45%)

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