Protein Alignment Antp and Hoxc4

DIOPT Version :10

• Sequence 1: NP_996167.1
• Gene: Antp / 40835
• FlyBaseID: FBgn0260642
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_001103354.1
• Gene: Hoxc4 / 24459
• RGDID: 1586210
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 251
• Identity: 86/251 - (34%)
• Similarity: 103/251 - (41%)
• Gaps: 95/251 - (37%)

  Fly   210 YTDVGVPDVTEVHQN--------------------HHNMGMY----------QQQSGVPPVGAPP 244
            |.|...|...|..||                    ||:..:|          ::|.....:..|.
  Rat    12 YIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPG 76

  Fly   245 QGMMHQGQGPPQMHQGHPGQHTP---PSQNPNSQSSGMPSP----------------------LY 284
            ....|   ||.|....||.:..|   |:  |.|.:|..|||                      :|
  Rat    77 NSRAH---GPAQAGHHHPEKSQPLCEPA--PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVY 136

  Fly   285 PWMRSQFGKCQ-----------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 338
            |||:    |..           |.||.|..|||.|.||||||||:||||||||||||||:|||:|
  Rat   137 PWMK----KIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSE 197

  Fly   339 RQIKIWFQNRRMKWKKEN-----KTKGEPGSGG---------------EGDEITPP 374
            ||||||||||||||||::     |.:..|.:|.               .....|||
  Rat   198 RQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPP 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Antp	NP_996167.1	KLF1_2_4_N	<161..306	CDD:425360	35/161 (22%)
		Homeodomain	298..354	CDD:459649	47/55 (85%)
Hoxc4	NP_001103354.1	Homeodomain	157..213	CDD:459649	47/55 (85%)