DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Antp and gbx1

DIOPT Version :9

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_777286.1 Gene:gbx1 / 142985 ZFINID:ZDB-GENE-020117-2 Length:316 Species:Danio rerio


Alignment Length:296 Identity:73/296 - (24%)
Similarity:102/296 - (34%) Gaps:123/296 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 PEG-GSPPLVDQMSGHHMNAQMTLPHHM---GHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQS 235
            |.| |:...:|.:.|    .....|.|:   |:|.. :.|..:.:|...    :|.::     .|
Zfish     4 PSGTGTAFSIDSLIG----TPQPRPGHLLYTGYPMF-MPYRPLMIPQAL----SHSSL-----PS 54

  Fly   236 GVPPVGAPPQGMMHQ---------GQGPPQM---------HQGHPGQHTPPSQNP----NSQSSG 278
            |:||: ||......:         |||.|.|         ....|....||.:.|    .:..:|
Zfish    55 GIPPL-APLASFAGRLTNTFCAGLGQGMPSMVALTTTLPSFSDPPDSFYPPQEMPGPRLGADGTG 118

  Fly   279 M---PSP------------------------LYPW------MRSQFGKCQER------------- 297
            |   .||                        ||..      :::....|.:|             
Zfish   119 MNRQESPHDELKGSELLNFTETFQAVAGETKLYSSDDEKLDLKAAEAACSDREDSSADSENESFS 183

  Fly   298 -------------------------------KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA 331
                                           :|.|..:|..|.||||||||..:||:...|.:||
Zfish   184 DGNTCASASQKGKLKGGSQDALPPGGSAGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIA 248

  Fly   332 HALCLTERQIKIWFQNRRMKWKK-----ENKTKGEP 362
            |||.|:|.|:||||||||.|||:     .|...|||
Zfish   249 HALKLSEVQVKIWFQNRRAKWKRIKAGNVNNRSGEP 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 37/233 (16%)
Homeobox 301..354 CDD:395001 32/52 (62%)
gbx1NP_777286.1 Homeobox 217..270 CDD:278475 31/52 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.