DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and hoxa9

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:XP_031760007.1 Gene:hoxa9 / 116411596 XenbaseID:XB-GENE-481973 Length:261 Species:Xenopus tropicalis


Alignment Length:380 Identity:94/380 - (24%)
Similarity:133/380 - (35%) Gaps:142/380 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MSTNNCESMTSYFTNSYM---GADMHHGHYPGNGVTDLDAQQMHHYSQNANHQGNMPYPRFPPYD 64
            |||:.  ::::|:.:|::   |.|:....:....:|     |....:.:|.|      |.|.|  
 Frog     1 MSTSG--TLSNYYVDSFLIHEGDDVVQPRFAPGSLT-----QPPRQAASAEH------PDFTP-- 50

  Fly    65 RMPYYNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTNGQLGVPQQQQQQQQQPSQNQQQQQAQ 129
                     ...|.:..|:|.|.:|      :.||...|                          
 Frog    51 ---------CSFQSKTSVFSSPWNP------LHPQTANN-------------------------- 74

  Fly   130 QAPQQLQQQLPQVTQQVTHPQQQQQQPVVYASCKLQ------AAVGGL-----------GMVPEG 177
                         ...|.||....|.|:..:..:..      .|.|.|           |:.|| 
 Frog    75 -------------VSSVYHPYMHHQPPISASDGRYMRSWLDPMAAGSLPFPGFPSSRSYGIKPE- 125

  Fly   178 GSPPLVDQMSGHHMNAQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGA 242
               |:..:...........||                |.|.                    |.|:
 Frog   126 ---PVAPRRGDCSTFDSRPLP----------------VSDY--------------------PCGS 151

  Fly   243 PPQGMMHQGQGPPQMHQG-HPGQHTPPSQNPNSQSSGMPSPLYPWMRSQFGKCQERKRGRQTYTR 306
            |.......|..|..:..| :|.....|..:||       :|...|:.::    ..||: |..||:
 Frog   152 PTDRDKQIGDPPFAVTNGENPSNGEKPPIDPN-------NPAANWLHAR----STRKK-RCPYTK 204

  Fly   307 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGE 361
            :|||||||||.||.||||.||.|:|..|.|||||:||||||||||.||.||.:.:
 Frog   205 HQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRSK 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 27/162 (17%)
Homeodomain 298..354 CDD:459649 39/55 (71%)
hoxa9XP_031760007.1 Hox9_act 1..182 CDD:461369 46/289 (16%)
Homeodomain 196..252 CDD:459649 40/56 (71%)

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