DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and Msx3

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_446164.1 Gene:Msx3 / 114504 RGDID:620932 Length:204 Species:Rattus norvegicus


Alignment Length:116 Identity:41/116 - (35%)
Similarity:54/116 - (46%) Gaps:28/116 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 PQGMMHQGQGPPQMHQGHPGQHTPPSQNPNSQSSGMPSPLYPWMRSQFGKCQERK-----RGRQT 303
            |.|....|..||      |..|:.|.:.|:      |.|           |..||     :.|..
  Rat    52 PPGASKPGAWPP------PVAHSCPPRAPS------PPP-----------CTLRKHKTNRKPRTP 93

  Fly   304 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 354
            :|..|.|.||::||..:||:...|.|.:.:|.|||.|:||||||||.|.|:
  Rat    94 FTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 15/66 (23%)
Homeodomain 298..354 CDD:459649 27/60 (45%)
Msx3NP_446164.1 Homeodomain 88..144 CDD:459649 26/55 (47%)

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