DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and CDX1

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001795.2 Gene:CDX1 / 1044 HGNCID:1805 Length:265 Species:Homo sapiens


Alignment Length:324 Identity:95/324 - (29%)
Similarity:122/324 - (37%) Gaps:114/324 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 YNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTNGQLGVPQQQQQQQQQPSQNQQQQQAQQAPQ 133
            |.|..:|:..  .||..|..|:|.  |:.|||     .|.|                     ||.
Human     2 YVGYVLDKDS--PVYPGPARPASL--GLGPQA-----YGPP---------------------APP 36

  Fly   134 QLQQQLPQVTQQVTHPQQQQQQPVVY-----ASCKLQAAVGGLGMVPEGGSPPLVDQMSGHHMNA 193
            ....|.|..: ..:|.:.....|..:     |.....||..|.|......||            |
Human    37 PAPPQYPDFS-SYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASP------------A 88

  Fly   194 QMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQGQGPPQMH 258
            .:.    .|.|           ||.:                   ||.|||      |.||..:.
Human    89 SLA----FGPP-----------PDFS-------------------PVPAPP------GPGPGLLA 113

  Fly   259 Q--GHPGQHTPPSQNPNSQSSGMPSPLYPWMRSQF--------GKCQERKRGRQTYTRYQTLELE 313
            |  |.||       .|:|..:..|:| |.|||...        ||.:.:.:.|..||.:|.||||
Human   114 QPLGGPG-------TPSSPGAQRPTP-YEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELE 170

  Fly   314 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEPGSGGEGDEITPPNSP 377
            ||||::||:|.||:.|:|..|.|||||:||||||||.|.:|.||.|.:        :..||..|
Human   171 KEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQ--------QQQPPQPP 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 35/154 (23%)
Homeodomain 298..354 CDD:459649 34/55 (62%)
CDX1NP_001795.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 9..153 51/234 (22%)
Caudal_act 13..142 CDD:461413 49/217 (23%)
Homeodomain 156..211 CDD:459649 34/54 (63%)
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536 157..178 12/20 (60%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 196..207 9/10 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 207..265 8/28 (29%)

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