DRSC/TRiP Functional Genomics Resources

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Protein Alignment Antp and hoxb1

DIOPT Version :10

Sequence 1:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster
Sequence 2:XP_004918719.1 Gene:hoxb1 / 100493290 XenbaseID:XB-GENE-485772 Length:304 Species:Xenopus tropicalis


Alignment Length:374 Identity:98/374 - (26%)
Similarity:132/374 - (35%) Gaps:123/374 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 GVTDLDAQQMHHYSQNANHQGNMPYPRFPPYDRMPYYNGQGMDQQQQHQVYSRPDSPSSQVGGVM 97
            |.:....:..||:     .||..|:|..|..:.:  |||.|                        
 Frog    18 GTSAYSPRGYHHF-----EQGTPPFPACPGTNDI--YNGDG------------------------ 51

  Fly    98 PQAQTNGQLGVPQQQQQQQQQPSQNQQQQQAQQAPQQLQQQLPQVTQQVTHPQQQQQQPVVYASC 162
             :....|..|||  ....||.||...|..........|....||...|....|       .||| 
 Frog    52 -RFVVGGGNGVP--SHLHQQNPSYPPQPSAGVPYTNSLTSYTPQTCNQAYGHQ-------AYAS- 105

  Fly   163 KLQAAVGGLGMVPEGGSPPLVDQMSGHHMNAQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHN 227
                        |:...  :..|.:.:..|                          |..:.|.::
 Frog   106 ------------PDADG--IYFQQTAYCSN--------------------------TGANSNSYS 130

  Fly   228 MG---------MYQQQSGVPPVGAPPQGMMHQGQGPPQM-HQGHPGQHTPPSQNPNSQSSGMPSP 282
            .|         .|||.    |.|...||::.....||.| |     :...|| .|:.|:  :|:.
 Frog   131 DGYCGAVPGPAQYQQH----PYGQEHQGLLQAYHNPPSMLH-----EEKEPS-CPSEQA--LPNH 183

  Fly   283 LYPWMRSQ------------FGKCQERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 335
            .:.||:.:            ||...::...|..:|..|..|||||||||:||||.||:|||..|.
 Frog   184 TFDWMKVKRNPPKTTAKPVDFGLSTQQNTIRTNFTTKQLTELEKEFHFNKYLTRARRVEIAATLE 248

  Fly   336 LTERQIKIWFQNRRMKWKKENK-------TKGEPGSGGEGDEITPPNSP 377
            |.|.|:||||||||||.||..:       .||.....||..:::...||
 Frog   249 LNETQVKIWFQNRRMKQKKREREGLAPSAIKGSMKENGEMSDLSSSTSP 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 28/166 (17%)
Homeodomain 298..354 CDD:459649 35/55 (64%)
hoxb1XP_004918719.1 PTZ00395 <12..>147 CDD:185594 38/214 (18%)
Homeodomain 214..267 CDD:459649 35/52 (67%)

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