DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and Nkx6-3

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001102925.1 Gene:Nkx6-3 / 685102 RGDID:1597780 Length:262 Species:Rattus norvegicus


Alignment Length:180 Identity:50/180 - (27%)
Similarity:73/180 - (40%) Gaps:39/180 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 YSPQSQTQKLK-------------NG--DFATPPPTTPTS-----LPPL--------EGISTPPQ 210
            ||.|:...||.             :|  |..:.|..||.|     .|.:        :|:...||
  Rat    29 YSVQNSFYKLSPPGLGPQLAAGTPHGITDILSRPVATPNSSLLSGYPHVAGFGGLSSQGVYYGPQ 93

  Fly   211 SPGEKSSSAVSQEINHRIVTAPNGAGDFNW-------SHIEETLASDCKDSKRTRQTYTRYQTLE 268
             .|..|.:........|...|..|.   :|       |:..:.|:......|.||.|:|.:|...
  Rat    94 -VGSFSKTGNEYPTRTRNCWADTGQ---DWRGSTRPCSNTPDPLSDTIHKKKHTRPTFTGHQIFA 154

  Fly   269 LEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSS 318
            |||.|...:|:....|..:|.:|.::|.|:|:||||||.|.:|...|:.|
  Rat   155 LEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKSALEPS 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 22/108 (20%)
Homeodomain 255..311 CDD:459649 24/55 (44%)
KLF1_2_4_N <321..404 CDD:425360
Nkx6-3NP_001102925.1 Homeodomain 139..197 CDD:459649 24/57 (42%)
Blue background indicates that the domain is not in the aligned region.

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