Protein Alignment ftz and Cdx2

DIOPT Version :10

• Sequence 1: NP_477498.1
• Gene: ftz / 40834
• FlyBaseID: FBgn0001077
• Length: 410
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 264
• Identity: 76/264 - (28%)
• Similarity: 111/264 - (42%)
• Gaps: 59/264 - (22%)

  Fly   124 PDY--FYTTVEQVKKAPAVSTKVTASPAPSYDQEYVTVPTPSASEDVDYLDVYSP------QSQT 180
            |||  ::..   ...|.|.:.....||.||:       ||...:...:..:.|:|      .:..
  Rat    38 PDYGGYHVA---AAAAAAANLDSAQSPGPSW-------PTAYGAPLREDWNGYAPGGAAAANAVA 92

  Fly   181 QKLKNGD------FATPP-----------PTTPTSLPP-LEGI--STPPQSPGEKSSSAVSQEIN 225
            ..|..|.      :::|.           |..|.:.|. ..|:  :..|..||..:::|..|
  Rat    93 HGLNGGSPAAAMGYSSPAEYHAHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQ--- 154

  Fly   226 HRIVTAPNG--AGDFNWSH--IEETLASDCK--DSKRTRQTYTRYQTLELEKEFHFNRYITRRRR 284
                .:|:|  .....|..  .:.:|.|..|  ...:.|..||.:|.||||||||::||||.||:
  Rat   155 ----LSPSGQRRNLCEWMRKPAQPSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK 215

  Fly   285 IDIANALSLSERQIKIWFQNRRMKSKK--DRTLDSSPEHCGAGYTAMLPPLEATSTATTGA-PSV 346
            .::|..|.|||||:||||||||.|.:|  .:.|....:.     ....||....|...:|| .||
  Rat   216 AELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQ-----QPPAPPPPQPSQPQSGALRSV 275

  Fly   347 PVPM 350
            |.|:
  Rat   276 PEPL 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ftz	NP_477498.1	FTZ	1..248	CDD:397787	28/155 (18%)
		Homeodomain	255..311	CDD:459649	34/55 (62%)
		KLF1_2_4_N	<321..404	CDD:425360	9/31 (29%)
Cdx2	NP_076453.1	Caudal_act	13..178	CDD:461413	29/156 (19%)
		Homeodomain	187..242	CDD:459649	34/54 (63%)