DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxa3a

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571609.2 Gene:hoxa3a / 58049 ZFINID:ZDB-GENE-000823-3 Length:410 Species:Danio rerio


Alignment Length:403 Identity:108/403 - (26%)
Similarity:156/403 - (38%) Gaps:113/403 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TYYDNSG--SNAYYQNTSNYQGY------YPQESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKA 86
            ||.|.|.  |...|| ::|..||      |.|..::||.|:            .|......|..:
Zfish     5 TYCDGSAIYSGLPYQ-SANGLGYDASQQQYLQALHAESEYH------------RPACSLQSPGIS 56

  Fly    87 TKRKAEDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPS 151
            ......::.:.:...:....:|:                   |.....|:.|      ||...||
Zfish    57 AGLHTSNEMSEVCQQINGTQATV-------------------TDTSDNKQPP------TAPSGPS 96

  Fly   152 YDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKS 216
                     :||:...:..:|        ...||....:|.|:|...:.|  .:....|:..:||
Zfish    97 ---------SPSSLNQIPNID--------SAAKNPVHVSPTPSTRKHIFP--WMKESRQNTKQKS 142

  Fly   217 SSAVSQEINHRIVTAPNGAGDFNWSHIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYITR 281
            .|.:|.|......:.|..|.                 |||.|..||..|.:|||||||||||:.|
Zfish   143 CSIISVESCAGDKSPPGSAA-----------------SKRARTAYTSAQLVELEKEFHFNRYLCR 190

  Fly   282 RRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCGAGYTAMLP---------PLEATS 337
            .||:::||.|:|:||||||||||||||.|||:.        |.|   |:|         |:..:|
Zfish   191 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK--------GLG---MMPSPGAQSPHSPVSLSS 244

  Fly   338 TATTGAPSVPVPMYHHHQTTAAY----PA-YSHSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQC 397
            ....|..|..:...|....:..|    || |:...|:.|.|...||...     :..|.|.::|.
Zfish   245 GGGGGGGSAYLSSMHSLVNSVTYDSPSPASYNKPQSNTYSLPTSYPPLN-----NCPPPQKRYQG 304

  Fly   398 SYQQHPQ-DLYHL 409
            :....|: |.:|:
Zfish   305 TGTATPEYDTHHI 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 42/225 (19%)
Homeodomain 255..311 CDD:459649 38/55 (69%)
KLF1_2_4_N <321..404 CDD:425360 21/96 (22%)
hoxa3aNP_571609.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 79..126 15/88 (17%)
Antp-type hexapeptide 127..132 1/6 (17%)
Homeodomain 164..220 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..249 6/37 (16%)
DUF4074 346..408 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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