DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxc11b

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_009298848.2 Gene:hoxc11b / 570925 ZFINID:ZDB-GENE-000822-3 Length:306 Species:Danio rerio


Alignment Length:273 Identity:69/273 - (25%)
Similarity:101/273 - (36%) Gaps:97/273 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 YTPDYFYTTVEQVKKAPAVSTKVTASPAP-------SYDQEYVTVP---------TPS------- 163
            |.|..:|        .|..||..:..|..       ||...:..||         .||       
Zfish    33 YLPSTYY--------VPEFSTVSSFLPQAQSRQITYSYSTNFTQVPQVRDLPFELNPSGKWHHRG 89

  Fly   164 ------ASEDVDYLDVYSPQ-SQTQKL-KNGDF--------ATPPPTT-------PTSLPP---- 201
                  |.||:.:.|...|. :.|:.| ||.:.        |...|.|       .|::.|    
Zfish    90 NYSSCYAEEDLVHRDCLPPSATMTEMLMKNENVYNHHHYHPAINHPGTGFYSSIGKTNVLPQSFD 154

  Fly   202 -------------------LEGISTPPQSPGEKSSSAVSQEINHRIVTAPNG--AGDFNWSHIEE 245
                               .:|.|..|:|..:.||...|.....:.:.....  :|.|      |
Zfish   155 RFLDCAHSGADGGSEGNCLQKGSSGKPESASQVSSVLRSTADGEKELECEKNTTSGSF------E 213

  Fly   246 TLASDCKDS------------KRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQI 298
            |.:....|:            ::.|..||::|..|||:||.||.||.:.:|:.::..|:|::||:
Zfish   214 TSSGTKNDNQTKSGHSTTPRMRKKRCPYTKFQIRELEREFFFNVYINKEKRLQLSRILNLTDRQV 278

  Fly   299 KIWFQNRRMKSKK 311
            ||||||||||.||
Zfish   279 KIWFQNRRMKEKK 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 38/196 (19%)
Homeodomain 255..311 CDD:459649 28/55 (51%)
KLF1_2_4_N <321..404 CDD:425360
hoxc11bXP_009298848.2 None
Blue background indicates that the domain is not in the aligned region.

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