Protein Alignment ftz and Hoxb4

DIOPT Version :10

• Sequence 1: NP_477498.1
• Gene: ftz / 40834
• FlyBaseID: FBgn0001077
• Length: 410
• Species: Drosophila melanogaster
• Sequence 2: NP_001094257.1
• Gene: Hoxb4 / 497988
• RGDID: 1560113
• Length: 250
• Species: Rattus norvegicus
• Alignment Length: 359
• Identity: 99/359 - (27%)
• Similarity: 120/359 - (33%)
• Gaps: 142/359 - (39%)

  Fly    11 SYADNMNMYNMYHPHSLPPTYYDNSGSNAYYQNTSNYQGYYPQESYSESCYY----YNNQEQVTT 71
            |:..|.|    |.....||.   ...|.:.|..:.:..|||......||.:.    :..:...|.
  Rat     5 SFLINSN----YVDPKFPPC---EEYSQSDYLPSDHSPGYYAGGQRRESGFQPEAAFGRRAPCTV 62

  Fly    72 QTV-----------PPVQPTTPPPKATKRKAEDDAASIIAAVEERPSTLRALLTNPVKKLKYTPD 125
            |..           ||..|..|||..:.|
  Rat    63 QRYAACRDPGPPPPPPPPPPPPPPGLSPR------------------------------------ 91

  Fly   126 YFYTTVEQVKKAPAVSTKVTASPAPSYDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFAT 190
                       ||..||.....|.|....|.|:...|
  Rat    92 -----------APVQSTAGALLPEPGQRSEVVSSSPP---------------------------- 117

  Fly   191 PPPTTPTSLPPLEGISTPPQSPGEKSSSAVSQEI-------NHRIVTAPNGAGDFNWSHIEETLA 248
            |||.....|.|         ||   |.||..:.:       .|.....||.||.
  Rat   118 PPPCAQNPLHP---------SP---SHSACKEPVVYPWMRKVHVSTVNPNYAGG----------- 159

  Fly   249 SDCKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDR 313
                :.||:|..|||.|.||||||||:|||:|||||::||:||.||||||||||||||||.|||.
  Rat   160 ----EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDH 220

  Fly   314 TLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVP 347
            .|.::....|           .|:.|..|.|..|
  Rat   221 KLPNTKIRSG-----------GTAGAAGGPPGRP 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ftz	NP_477498.1	FTZ	1..248	CDD:397787	46/258 (18%)
		Homeodomain	255..311	CDD:459649	43/55 (78%)
		KLF1_2_4_N	<321..404	CDD:425360	6/27 (22%)
Hoxb4	NP_001094257.1	Homeodomain	162..218	CDD:459649	43/55 (78%)