DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxc8

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001006787.1 Gene:hoxc8 / 448482 XenbaseID:XB-GENE-480999 Length:242 Species:Xenopus tropicalis


Alignment Length:203 Identity:71/203 - (34%)
Similarity:88/203 - (43%) Gaps:64/203 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 YLDVYSPQ--SQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGE---KSSSAVSQEINHRIV 229
            |.|...||  |::..|..|..||.|           |...|.....|   ..||::|.....:..
 Frog    23 YYDCRFPQSVSRSHALVYGPSATAP-----------GFQHPSHHVQEFFHHGSSSLSNSGFQQNP 76

  Fly   230 TAPNGAGDFNWSHIEETL-----------AS-----DCKDSKRT--------------------- 257
            .|....||.:..:..|.|           ||     |||.|..|                     
 Frog    77 CALTCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSSNTNTSEGQGHLNQNSSPSLMFPW 141

  Fly   258 -----------RQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKK 311
                       ||||:|||||||||||.||.|:||:|||::::||.|:|||:||||||||||.||
 Frog   142 MRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK 206

  Fly   312 DRTLDSSP 319
            :...|..|
 Frog   207 ENNKDKLP 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 21/93 (23%)
Homeodomain 255..311 CDD:459649 40/87 (46%)
KLF1_2_4_N <321..404 CDD:425360
hoxc8NP_001006787.1 Homeodomain 150..206 CDD:459649 39/55 (71%)
Blue background indicates that the domain is not in the aligned region.

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