DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxb9

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_988879.1 Gene:hoxb9 / 394474 XenbaseID:XB-GENE-963094 Length:247 Species:Xenopus tropicalis


Alignment Length:208 Identity:75/208 - (36%)
Similarity:99/208 - (47%) Gaps:44/208 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 KAPAVSTKVT------ASPAPSYDQEYVT--VPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPP 192
            |||..|...:      |||.||....|:.  .|||.......:|:      ..|:.:||......
 Frog    57 KAPVFSASWSPLNPHPASPLPSVYHPYIQQGAPTPEGRYLRGWLE------PLQRAENGPGQGTV 115

  Fly   193 PTTPTSLPP--LEGISTPPQSPGEKSSSAVSQEINHRIVTAPN----GAGD----------FNWS 241
            .:.|...||  |:.:.....:.|   |.|..::.|.|.....|    |:||          .||.
 Frog   116 KSEPLLGPPGELDKLGAQQYNLG---SPAAREDANERATFPDNKLCEGSGDKDRTHQSNPSANWL 177

  Fly   242 HIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRR 306
            |        .:.|::.|..||:||||||||||.||.|:||.||.::|..|:|||||:||||||||
 Frog   178 H--------ARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRR 234

  Fly   307 MKSK---KDRTLD 316
            ||.|   ||::.|
 Frog   235 MKMKKLNKDQSKD 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 33/135 (24%)
Homeodomain 255..311 CDD:459649 38/58 (66%)
KLF1_2_4_N <321..404 CDD:425360
hoxb9NP_988879.1 Hox9_act 1..169 CDD:461369 30/120 (25%)
Homeodomain 183..239 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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