DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and Lim3

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster


Alignment Length:232 Identity:44/232 - (18%)
Similarity:74/232 - (31%) Gaps:88/232 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 HIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRR 306
            :::.:|..| :.:||.|.|.|..|...|:..::.:....|..|..::....|..|.:::||||||
  Fly   245 YLDGSLDGD-QPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 308

  Fly   307 MKSKK-------------------------DRTLD------------------------------ 316
            .|.|:                         |:.||                              
  Fly   309 AKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDE 373

  Fly   317 -SSPEHCGAGYTAMLPPLEATSTATTGAPS--VPVPMYHHHQTTAAYP---AYS----------- 364
             :||......|      :..:|:.:...||  .|.|:...| |..:||   .|:           
  Fly   374 GASPHSIRGSY------MHGSSSPSQYPPSSRSPPPVGQGH-TFGSYPDNIVYTNIDQAVGSSLH 431

  Fly   365 --------HSHSHGYGLLNDYPQQQTHQQYDAYPQQY 393
                    ||.::...|.||....|.:..:...|..:
  Fly   432 ASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSW 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 0/5 (0%)
Homeodomain 255..311 CDD:459649 18/55 (33%)
KLF1_2_4_N <321..404 CDD:425360 18/97 (19%)
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754
LIM2_Lhx3_Lhx4 181..236 CDD:188762
Homeodomain 257..313 CDD:459649 18/55 (33%)
Blue background indicates that the domain is not in the aligned region.

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