Protein Alignment ftz and hoxc3a

DIOPT Version :10

• Sequence 1: NP_477498.1
• Gene: ftz / 40834
• FlyBaseID: FBgn0001077
• Length: 410
• Species: Drosophila melanogaster
• Sequence 2: NP_001128157.3
• Gene: hoxc3a / 30421
• ZFINID: ZDB-GENE-980526-532
• Length: 263
• Species: Danio rerio
• Alignment Length: 173
• Identity: 62/173 - (35%)
• Similarity: 90/173 - (52%)
• Gaps: 24/173 - (13%)

  Fly   198 SLPPLEGISTPPQSPGEKSSSAVS----------QEINHRIVTAPNGAGDFNWSHIEETLASDCK 252
            ||.|...:..  :...|.|:|.:|          .|:.|........:||..:|:.|..:.:  .
Zfish    96 SLDPANALGR--KKACELSTSCLSTMKYPWMRETHELMHFSSINAMESGDSKYSNGEAVVRN--S 156

  Fly   253 DSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDR---- 313
            .|||.|..:|..|.|||||||||:.|:.|.||:::|..|.|::|||||||||||||.|||.
Zfish   157 SSKRARVAFTSSQLLELEKEFHFSAYLCRNRRLEMAELLKLTDRQIKIWFQNRRMKYKKDHKEKS 221

  Fly   314 TLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVPVPMYHHHQT 356
            |..||..:.|.....::     .|.:||.:| ||:...::::|
Zfish   222 TAKSSYTYLGTENQPLI-----ISRSTTDSP-VPLKFQNNYET 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ftz	NP_477498.1	FTZ	1..248	CDD:397787	13/59 (22%)
		Homeodomain	255..311	CDD:459649	34/55 (62%)
		KLF1_2_4_N	<321..404	CDD:425360	8/36 (22%)
hoxc3a	NP_001128157.3	None