DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxd3a

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:408 Identity:112/408 - (27%)
Similarity:160/408 - (39%) Gaps:151/408 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TYYDNSGSNAYYQNTSNYQGY-YPQESYSESCYYYNNQEQVTTQTV-----PPVQP--TTPPPKA 86
            |||||:|.         :.|| ||:   |:|..|....:..::.::     .|:.|  ||...:|
Zfish     5 TYYDNAGL---------FGGYSYPK---SDSYTYGPTHQGFSSSSIENDYQSPICPIQTTSVRQA 57

  Fly    87 TKRKAEDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPS 151
            |.:..:.:.:.:      |||..:.         ...|:   :..||.:.||..:    :||:||
Zfish    58 THKNGDINGSCM------RPSASQG---------NSQPE---SISEQQQAAPLAA----SSPSPS 100

  Fly   152 YDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKS 216
                                     .:.|||.|                          ||....
Zfish   101 -------------------------TNSTQKKK--------------------------SPSSNG 114

  Fly   217 SSAVSQEINHRIVTAPNGAGDFNWSHIEET-------------LASDCKD-------SKRTRQTY 261
            ||..:..|:.:|         |.|  ::||             ....|.|       |||.|..|
Zfish   115 SSTATPVISKQI---------FPW--MKETRQNAKQKSTNCPAAGETCDDKSPPGPASKRVRTAY 168

  Fly   262 TRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDR------------T 314
            |..|.:|||||||||||:.|.||:::||.|:|:||||||||||||||.|||:            :
Zfish   169 TSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIMHSPLGHS 233

  Fly   315 LDSSPEHCGA---GYTAMLPPLEATSTATTGAPSVPVPMYHHHQTTAAYPAYSHSHSHGYGLLND 376
            .|.||...|:   ||:..||.:.:.|......||...|..:.: ..|||.|         .|...
Zfish   234 PDRSPPLSGSNHIGYSGQLPNVNSLSYDAPSPPSFAKPQQNIY-GLAAYTA---------PLGGC 288

  Fly   377 YPQQQTH--QQYDAYPQQ 392
            .|||:.:  .:||.:..|
Zfish   289 IPQQKRYPGTEYDHHSMQ 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 45/238 (19%)
Homeodomain 255..311 CDD:459649 38/55 (69%)
KLF1_2_4_N <321..404 CDD:425360 20/77 (26%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 40/231 (17%)
COG5576 116..237 CDD:227863 52/131 (40%)
Antp-type hexapeptide 126..131 3/15 (20%)
Homeodomain 162..218 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 5/26 (19%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

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