Protein Alignment ftz and Msx2

DIOPT Version :10

• Sequence 1: NP_477498.1
• Gene: ftz / 40834
• FlyBaseID: FBgn0001077
• Length: 410
• Species: Drosophila melanogaster
• Sequence 2: NP_037114.2
• Gene: Msx2 / 25483
• RGDID: 3116
• Length: 267
• Species: Rattus norvegicus
• Alignment Length: 315
• Identity: 68/315 - (21%)
• Similarity: 115/315 - (36%)
• Gaps: 89/315 - (28%)

  Fly    86 ATKRKAEDDAASIIAAVEERPSTLRALLTNP-------------VKKLKYTPDYFYTTVEQVKKA 137
            |:..|..|    :.::.||.|:.|......|             |..|.::.:...:..:..|::
  Rat     2 ASPSKGGD----LFSSDEEGPAVLAGPGPGPGGAEGGAEERRVKVSSLPFSVEALMSDKKPPKES 62

  Fly   138 PAVSTKVTASPAPSYDQEYVTVPTPSASEDVDYLDVYSP-------QSQTQKLKNGDFATPPPTT 195
            |||.....::.|         |..|.........|.:||       ::.:.|.:|.:...|....
  Rat    63 PAVPPDCASAGA---------VLRPLLLPGHGVRDAHSPGPLVKPFETASVKSENSEDGAPWIQE 118

  Fly   196 PTSLPPLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLAS--DCKDSKRTR 258
            |....|      ||:                               |:..|..:  ..|.:::.|
  Rat   119 PGRYSP------PPR-------------------------------HMSPTTCTLRKHKTNRKPR 146

  Fly   259 QTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCG 323
            ..:|..|.|.||::|...:|::...|.:.:::|:|:|.|:||||||||.|:|  |..::..|...
  Rat   147 TPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAK--RLQEAELEKLK 209

  Fly   324 AGYTAMLP-----------PLEATSTATTG----APSVPVPMYHHHQTTAAYPAY 363
            .....|||           ||:|.|..:..    .|.:|:|....:.|...|..|
  Rat   210 MAAKPMLPSGFSLPFPINSPLQAASIYSASYPFHRPVLPIPPVGLYATPVGYGMY 264

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ftz	NP_477498.1	FTZ	1..248	CDD:397787	29/181 (16%)
		Homeodomain	255..311	CDD:459649	22/55 (40%)
		KLF1_2_4_N	<321..404	CDD:425360	13/58 (22%)
Msx2	NP_037114.2	Homeodomain	143..199	CDD:459649	23/57 (40%)