DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and Hoxc8

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001170797.2 Gene:Hoxc8 / 24460 RGDID:2821 Length:242 Species:Rattus norvegicus


Alignment Length:102 Identity:48/102 - (47%)
Similarity:58/102 - (56%) Gaps:32/102 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 DCKDSKRT--------------------------------RQTYTRYQTLELEKEFHFNRYITRR 282
            |||.|..|                                ||||:|||||||||||.||.|:||:
  Rat   113 DCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRK 177

  Fly   283 RRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSP 319
            |||::::||.|:|||:||||||||||.||:...|..|
  Rat   178 RRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLP 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787
Homeodomain 255..311 CDD:459649 40/87 (46%)
KLF1_2_4_N <321..404 CDD:425360
Hoxc8NP_001170797.2 Homeodomain 150..206 CDD:459649 39/55 (71%)
Blue background indicates that the domain is not in the aligned region.

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