Protein Alignment ftz and Hoxc4

DIOPT Version :10

• Sequence 1: NP_477498.1
• Gene: ftz / 40834
• FlyBaseID: FBgn0001077
• Length: 410
• Species: Drosophila melanogaster
• Sequence 2: NP_001103354.1
• Gene: Hoxc4 / 24459
• RGDID: 1586210
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 362
• Identity: 106/362 - (29%)
• Similarity: 134/362 - (37%)
• Gaps: 132/362 - (36%)

  Fly    41 YQNTSNY--QGYYPQESYSESCY-------YYNNQEQVTTQ-----TVPPVQPTTPPPKATKRKA 91
            |...|||  ..:.|.|.||::.|       ||....:...|     ..||     |||:.:..:.
  Rat     6 YLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPP-----PPPRPSYPER 65

  Fly    92 EDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPSYDQEY 156
            :....|:     :.|...||  ..|.:...:.|:         |..|      ...|||
  Rat    66 QYSCTSL-----QGPGNSRA--HGPAQAGHHHPE---------KSQP------LCEPAP------ 102

  Fly   157 VTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKSSSAVS 221
                                       .:|..|:|.|..|....|         :|...||:|..
  Rat   103 ---------------------------LSGASASPSPAPPACSQP---------APDHPSSAASK 131

  Fly   222 QEI-------NHRIVTAPNGAGDFNWSHIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYI 279
            |.|       .|.....||..|.               :.||:|..|||.|.||||||||:|||:
  Rat   132 QPIVYPWMKKIHVSTVNPNYNGG---------------EPKRSRTAYTRQQVLELEKEFHYNRYL 181

  Fly   280 TRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAP 344
            ||||||:||::|.||||||||||||||||.|||..|.::.       ....||..|       ||
  Rat   182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTK-------VRSAPPAGA-------AP 232

  Fly   345 SVPVPMYHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQ 381
            |.         .:||.|..|..||..    ...|:||
  Rat   233 ST---------LSAATPGTSEDHSQS----ATPPEQQ 256

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ftz	NP_477498.1	FTZ	1..248	CDD:397787	44/227 (19%)
		Homeodomain	255..311	CDD:459649	43/55 (78%)
		KLF1_2_4_N	<321..404	CDD:425360	15/61 (25%)
Hoxc4	NP_001103354.1	Homeodomain	157..213	CDD:459649	43/55 (78%)