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Protein Alignment ftz and Msx1

DIOPT Version :10

Sequence 1:	NP_477498.1	Gene:	ftz / 40834	FlyBaseID:	FBgn0001077	Length:	410	Species:	Drosophila melanogaster
Sequence 2:	NP_034965.2	Gene:	Msx1 / 17701	MGIID:	97168	Length:	303	Species:	Mus musculus

Alignment Length:	258	Identity:	62/258 - (24%)
Similarity:	92/258 - (35%)	Gaps:	91/258 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly   193 PTTPTSLPP--LEGISTPPQSPGEKSSSAVSQE--------INH-----------RIVTAPNGAG 236
            |..|.||.|  :|.:....:.||.|.|..|:.|        :.|           ...::|...|
Mouse    52 PKVPASLLPFSVEALMADHRKPGAKESVLVASEGAQAAGGSVQHLGTRPGSLGAPDAPSSPRPLG 116

  Fly   237 DFNWSHI----EETLAS-----------------------------DC-----KDSKRTRQTYTR 263
            .|:...:    |:.|..                             .|     |.:::.|..:|.
Mouse   117 HFSVGGLLKLPEDALVKAESPEKLDRTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTT 181

  Fly   264 YQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCGAGYTA 328
            .|.|.||::|...:|::...|.:.:::|||:|.|:||||||||.|:|  |..::..|........
Mouse   182 AQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK--RLQEAELEKLKMAAKP 244

  Fly   329 MLPPL----------EATSTATTGA--------------PSVPVPMYHHHQTTAAYPAYSHSH 367
            ||||.          .|...|..||              |..||.:|      .|:..||..|
Mouse   245 MLPPAAFGLSFPLGGPAAVAAAAGASLYSASGPFQRAALPVAPVGLY------TAHVGYSMYH 301

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.