DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ftz and lin-39

DIOPT Version :9

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001021164.1 Gene:lin-39 / 176068 WormBaseID:WBGene00003024 Length:253 Species:Caenorhabditis elegans


Alignment Length:288 Identity:79/288 - (27%)
Similarity:115/288 - (39%) Gaps:78/288 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 VTTQTVPPVQPTTPPPKATKRKAEDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQ 133
            :||.|.|   .:|..|:||   |.:.::|..::.....||                         
 Worm     1 MTTSTSP---SSTDAPRAT---APESSSSSSSSSSSSSST------------------------- 34

  Fly   134 VKKAPAVSTKVTASPAPSYDQEYVTV----PTPSASEDVDYLDVYSPQSQTQ------------- 181
                    :.|.||..||..:...|:    .|.||:....:...|.|.|.:|             
 Worm    35 --------SSVGASGIPSSSELSSTIGYDPMTASAALSAHFGSYYDPTSSSQIASYFASSQGLGG 91

  Fly   182 ----KLKNGDFATPPPTTPT--SLPPLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNW 240
                .|.:......|..|.|  ....|||.....:...:|..|....:::..     :|...:.|
 Worm    92 PQYPILGDQSLCYNPSVTSTHHDWKHLEGDDDDDKDDDKKGISGDDDDMDKN-----SGGAVYPW 151

  Fly   241 SHIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNR 305
            .....:.....:..||.|..|||.|.||||||||.::|:||:|||::|::|.|:|||:|||||||
 Worm   152 MTRVHSTTGGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNR 216

  Fly   306 RMKSKKDRTLDSSPEHCGAGYTAMLPPL 333
            |||.||:.  ...|         |.||:
 Worm   217 RMKHKKEN--KDKP---------MTPPM 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:281812 36/201 (18%)
Homeobox 257..310 CDD:278475 35/52 (67%)
lin-39NP_001021164.1 Homeobox 169..221 CDD:278475 35/51 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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