DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and Hoxc4

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_038581.2 Gene:Hoxc4 / 15423 MGIID:96195 Length:264 Species:Mus musculus


Alignment Length:362 Identity:106/362 - (29%)
Similarity:134/362 - (37%) Gaps:132/362 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 YQNTSNY--QGYYPQESYSESCY-------YYNNQEQVTTQ-----TVPPVQPTTPPPKATKRKA 91
            |...|||  ..:.|.|.||::.|       ||....:...|     ..||     |||:.:..:.
Mouse     6 YLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPP-----PPPRPSYPER 65

  Fly    92 EDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPSYDQEY 156
            :....|:     :.|...||  ..|.:...:.|:         |..|      ...|||      
Mouse    66 QYSCTSL-----QGPGNSRA--HGPAQAGHHHPE---------KSQP------LCEPAP------ 102

  Fly   157 VTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKSSSAVS 221
                                       .:|..|:|.|..|....|         :|...||:|..
Mouse   103 ---------------------------LSGTSASPSPAPPACSQP---------APDHPSSAASK 131

  Fly   222 QEI-------NHRIVTAPNGAGDFNWSHIEETLASDCKDSKRTRQTYTRYQTLELEKEFHFNRYI 279
            |.|       .|.....||..|.               :.||:|..|||.|.||||||||:|||:
Mouse   132 QPIVYPWMKKIHVSTVNPNYNGG---------------EPKRSRTAYTRQQVLELEKEFHYNRYL 181

  Fly   280 TRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAP 344
            ||||||:||::|.||||||||||||||||.|||..|.::.       ....||..|       ||
Mouse   182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTK-------VRSAPPAGA-------AP 232

  Fly   345 SVPVPMYHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQ 381
            |.         .:||.|..|..||..    ...|:||
Mouse   233 ST---------LSAATPGTSEDHSQS----ATPPEQQ 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 44/227 (19%)
Homeodomain 255..311 CDD:459649 43/55 (78%)
KLF1_2_4_N <321..404 CDD:425360 15/61 (25%)
Hoxc4NP_038581.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..130 33/179 (18%)
Antp-type hexapeptide 135..140 0/4 (0%)
Homeodomain 157..213 CDD:459649 43/55 (78%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..264 17/70 (24%)

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