DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxc6

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_004911991.1 Gene:hoxc6 / 101733663 XenbaseID:XB-GENE-478131 Length:242 Species:Xenopus tropicalis


Alignment Length:189 Identity:73/189 - (38%)
Similarity:94/189 - (49%) Gaps:37/189 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 SASEDVDYLDVYSPQSQTQKLKNGDFATPPPTT--PTSLPPLEG------------ISTPPQSPG 213
            :|.:.|.:...|.......::.:..|.||....  .:|..|.|.            .|....|.|
 Frog    29 TAYDPVRHFSTYGAAVAQNRIYSSPFYTPQDNVVFGSSRGPYEYGSNAFYQDKDMLTSCRQNSMG 93

  Fly   214 EKSSSAVSQEINHRIVTAPNGAGD--------FNW-----SHIEETLASDC------KDSKRTRQ 259
            ..:.|:::|:.:..   ...|.|.        :.|     || ...|.||.      .|.:|.||
 Frog    94 HNTQSSLAQDFSSE---QSRGNGQEQKGSIQIYPWMQRMNSH-SVCLVSDSLGVGYGADRRRGRQ 154

  Fly   260 TYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSS 318
            .|:||||||||||||||||:||||||:|||||.|:||||||||||||||.||:..|.|:
 Frog   155 IYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTST 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 19/111 (17%)
Homeodomain 255..311 CDD:459649 46/55 (84%)
KLF1_2_4_N <321..404 CDD:425360
hoxc6XP_004911991.1 Homeodomain 150..206 CDD:459649 46/55 (84%)
Blue background indicates that the domain is not in the aligned region.

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