DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and hoxc5

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_002936695.2 Gene:hoxc5 / 100487879 XenbaseID:XB-GENE-485672 Length:225 Species:Xenopus tropicalis


Alignment Length:238 Identity:87/238 - (36%)
Similarity:112/238 - (47%) Gaps:62/238 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 YTPDYFYTTVEQVKKAPAVSTKV-----TASPAPSYDQEY------VTVPTPSASEDVDYLDVYS 175
            |..:.||   :|.:..||.|.:.     :.|..||....|      :|.|:|.:|..:..||:.|
 Frog     4 YVANSFY---KQSQNVPAYSMQSYGNYGSVSEVPSSRYCYSGLDLSITFPSPGSSNSLSALDMPS 65

  Fly   176 -PQSQTQK--------------------LKNGDFATPPPTTPTSLPP----LEGISTPPQSPGEK 215
             |.:.:::                    |.:|.:.....|  |||..    :|.|.|.|.....:
 Frog    66 NPNANSERPSCTVMGSSGHTVGRGEQSALNSGIYNQKAAT--TSLEERSKGIESIKTEPAQSTPQ 128

  Fly   216 SSSAVSQEINHRIVTAPNGAGDFNW------SHIEETLASDCKDSKRTRQTYTRYQTLELEKEFH 274
            ......|:........|       |      ||  ||      |.||:|.:||||||||||||||
 Frog   129 GGQPQQQQQQQPPQIYP-------WMTKLHMSH--ET------DGKRSRTSYTRYQTLELEKEFH 178

  Fly   275 FNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDS 317
            ||||:||||||:|||.|.|:||||||||||||||.|||..:.|
 Frog   179 FNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDTKVKS 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787 36/167 (22%)
Homeodomain 255..311 CDD:459649 46/55 (84%)
KLF1_2_4_N <321..404 CDD:425360
hoxc5XP_002936695.2 Homeodomain 159..215 CDD:459649 46/55 (84%)
Blue background indicates that the domain is not in the aligned region.

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