DRSC/TRiP Functional Genomics Resources

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Protein Alignment ftz and nkx2-1

DIOPT Version :10

Sequence 1:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_002935383.1 Gene:nkx2-1 / 100135015 XenbaseID:XB-GENE-485985 Length:346 Species:Xenopus tropicalis


Alignment Length:178 Identity:48/178 - (26%)
Similarity:73/178 - (41%) Gaps:37/178 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 KRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSK---KDRTL- 315
            ::.|..:::.|..|||:.|...:|::...|..:|:.:.|:..|:||||||.|.|.|   ||:.. 
 Frog   163 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQ 227

  Fly   316 ------DSSPEHCGAGYTAMLP-------PLEATSTATTGAPSVPVPMYHHHQTTAAYPAYSHSH 367
                  :||.:...:.....:|       |.:|.|...|.|      :..|.|.||.....:   
 Frog   228 QQMQQDNSSCQQQQSPRRVAVPVLVKDGKPCQAGSNTPTAA------LQSHQQQTATAITVT--- 283

  Fly   368 SHGYGLLNDYPQQQTHQQYDA--YPQQYQHQ---CSYQQHPQDLYHLS 410
            |:|.|      ..|:||...|  .|....|.   .|.|.....|.||:
 Frog   284 SNGLG------PHQSHQTNSAGQSPDLVPHSNSPSSLQNQVTSLSHLN 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftzNP_477498.1 FTZ 1..248 CDD:397787
Homeodomain 255..311 CDD:459649 20/58 (34%)
KLF1_2_4_N <321..404 CDD:425360 21/94 (22%)
nkx2-1XP_002935383.1 Homeodomain 163..219 CDD:459649 19/55 (35%)
Blue background indicates that the domain is not in the aligned region.

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