DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and HB4

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_182018.1 Gene:HB4 / 819100 AraportID:AT2G44910 Length:318 Species:Arabidopsis thaliana


Alignment Length:240 Identity:57/240 - (23%)
Similarity:93/240 - (38%) Gaps:55/240 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 QQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNN------SQSLASPQDLSTR 213
            ||::...:.|:.      |:|...|........|.||||.....:|      .||....:..:.|
plant    18 QQKEPSLRLNLM------PLTTSSSSSSFQHMHNQNNNSHPQKIHNISWTHLFQSSGIKRTTAER 76

  Fly   214 DISPKLSPSSVVESVARSLNKGVLGGSLAAA----AAAAGLNNNHSGSGVSGGPGNVNVPMHSPG 274
                    :|...|..|..|......|:|..    .||...:.|.:.|.:||...::.|   :.|
plant    77 --------NSDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAV---ARG 130

  Fly   275 GGDSDSE----SDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQ 335
            |.::::|    |..|...||....|                        .||:..|::...::.|
plant   131 GDENEAERASCSRGGGSGGSDDEDG------------------------GNGDGSRKKLRLSKDQ 171

  Fly   336 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 380
            .|.||:.|..:..|..::::.:|..|.|..||:::||||||.:.|
plant   172 ALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTK 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 19/56 (34%)
HB4NP_182018.1 HD-ZIP_N 8..124 CDD:461370 27/119 (23%)
Homeodomain 162..216 CDD:459649 18/53 (34%)
HALZ 218..261 CDD:128634
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.