Protein Alignment Scr and cdx4

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_571184.2
• Gene: cdx4 / 798281
• ZFINID: ZDB-GENE-980526-330
• Length: 270
• Species: Danio rerio
• Alignment Length: 209
• Identity: 69/209 - (33%)
• Similarity: 94/209 - (44%)
• Gaps: 38/209 - (18%)

  Fly   240 SLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPP-- 302
            |..|..|..|......|:...|.|.:::.||.:...|.....|...|   :....|:....||
Zfish    55 SAGAWGAPYGAPREDWGAYSLGPPNSISAPMSNSSPGPVSYCSPDYN---TMHGPGSAVLPPPPE 116

  Fly   303 --------------QIYPWMKRVHLGTSTVNANGETK---RQRTSYTRYQTLELEKEFHFNRYLT 350
                          ..|.||.:....:||    |:|:   :.|..||.:|.||||||||||||:|
Zfish   117 NIPVAQLSPERERRNSYQWMSKTVQSSST----GKTRTKEKYRVVYTDHQRLELEKEFHFNRYIT 177

  Fly   351 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM---------ASMNIVPYHMGPYGHP--YHQ 404
            .||:.|:|..|.|:|||:||||||||.|.:|..|.         .|::..|..:.|...|  ...
Zfish   178 IRRKSELAVNLGLSERQVKIWFQNRRAKERKLIKKKLGQSDGSGGSVHSDPGSVSPLPVPGSLSP 242

  Fly   405 FDIHPSQF-AHLSA 417
            .|||.|.: |.::|
Zfish   243 SDIHGSLYPAQMNA 256

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	35/58 (60%)
cdx4	NP_571184.2	Caudal_act	13..146	CDD:461413	20/97 (21%)
		Homeodomain	153..208	CDD:459649	35/54 (65%)