DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and lbx1

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001072559.1 Gene:lbx1 / 780014 XenbaseID:XB-GENE-6455157 Length:265 Species:Xenopus tropicalis


Alignment Length:173 Identity:43/173 - (24%)
Similarity:66/173 - (38%) Gaps:62/173 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 LSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPG 274
            ||:|.:..:.||...:|.:|....||:....|.||....|:                        
 Frog    73 LSSRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGM------------------------ 113

  Fly   275 GGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLEL 339
                               :..|::..|:     ||              ::.||::|.:|..||
 Frog   114 -------------------TIFGQRQTPK-----KR--------------RKSRTAFTNHQIYEL 140

  Fly   340 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 382
            ||.|.:.:||:...|.:||..|.||..|:..||||||.|.|::
 Frog   141 EKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRD 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 25/55 (45%)
lbx1NP_001072559.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33
Homeodomain 126..182 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..265
Blue background indicates that the domain is not in the aligned region.

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