Protein Alignment Scr and Vsx1

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001103016.1
• Gene: Vsx1 / 689704
• RGDID: 1305667
• Length: 369
• Species: Rattus norvegicus
• Alignment Length: 137
• Identity: 43/137 - (31%)
• Similarity: 61/137 - (44%)
• Gaps: 13/137 - (9%)

  Fly   263 PGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQ 327
            |.....|:|.|....|...|:  |.:.|..:|.:.:||.|::           |......:.:|.
  Rat   120 PAVAQSPVHPPPALGSQQRSE--NISTSDGDSPSEEKNDPKM-----------SLTLGKRKKRRH 171

  Fly   328 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 392
            ||.:|.:|..||||.|....|.....|..:|....|.|.:|::||||||.||:|..|....:.|.
  Rat   172 RTVFTAHQLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVM 236

  Fly   393 YHMGPYG 399
            ...|.||
  Rat   237 AEYGLYG 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	24/55 (44%)
Vsx1	NP_001103016.1	Homeodomain	169..225	CDD:459649	24/55 (44%)