DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Cdx2

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_076453.1 Gene:Cdx2 / 66019 RGDID:621234 Length:310 Species:Rattus norvegicus


Alignment Length:419 Identity:93/419 - (22%)
Similarity:131/419 - (31%) Gaps:172/419 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 YANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQ 159
            |.:...:.|..|        |.||..:...|.......|..||||.|                  
  Rat    14 YPSSVRHSGGLN--------LAPQNFVSPPQYPDYGGYHVAAAAAAA------------------ 52

  Fly   160 QQQANISCKYANDPVTP-----------GGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTR 213
               ||:....:..|..|           .|...||.:.:|                         
  Rat    53 ---ANLDSAQSPGPSWPTAYGAPLREDWNGYAPGGAAAAN------------------------- 89

  Fly   214 DISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNN--------------NHSGSGVSGGPG 264
                         :||..||    |||   .|||.|.::              :|..:..|...|
  Rat    90 -------------AVAHGLN----GGS---PAAAMGYSSPAEYHAHHHPHHHPHHPAAAPSCASG 134

  Fly   265 NVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETK-RQR 328
            .:......|.|..:.:.::..:.:|..:|          :..||::....:........|| :.|
  Rat   135 LLQTLNPGPPGPAATAAAEQLSPSGQRRN----------LCEWMRKPAQPSLGSQVKTRTKDKYR 189

  Fly   329 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 393
            ..||.:|.||||||||::||:|.||:.|:|..|.|:|||:||||||||.|.:|.:|         
  Rat   190 VVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK--------- 245

  Fly   394 HMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQSQDG--- 455
                                                 .:|.|:..|...|.......|.|.|   
  Rat   246 -------------------------------------KKLQQQQQQQPPAPPPPQPSQPQSGALR 273

  Fly   456 -------------GPIGGGSVGVGGGAGG 471
                         |.:.|...||.|.|||
  Rat   274 SVPEPLSPVTSLQGSVPGSVPGVLGPAGG 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 34/56 (61%)
Cdx2NP_076453.1 Caudal_act 13..178 CDD:461413 41/247 (17%)
Homeodomain 187..242 CDD:459649 33/54 (61%)

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