DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and hmx3a

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_571709.3 Gene:hmx3a / 60310 ZFINID:ZDB-GENE-001020-1 Length:297 Species:Danio rerio


Alignment Length:171 Identity:52/171 - (30%)
Similarity:73/171 - (42%) Gaps:36/171 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 PGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGE---TKRQRTSYTRY 334
            |...|.:.::.||:|....::.....|....|..|.|      |...|:.:   .|:.||.::|.
Zfish   122 PDAKDDEDDNKSGDEIVLEESDTEDGKKEGSIDDWKK------SDDGADKKPCRKKKTRTVFSRS 180

  Fly   335 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE-----------HKMASM 388
            |..:||..|...|||:...|..:|.:|.|||.|:||||||||.|||::           |..|..
Zfish   181 QVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 245

  Fly   389 NI-VP--YHMG------------PYGHPYHQFDIHPSQFAH 414
            .: ||  ||..            |...|...|. ||..::|
Zfish   246 IVRVPILYHENSASESTNTAGNVPVSQPLLTFP-HPVYYSH 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 28/55 (51%)
hmx3aNP_571709.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..43
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..172 11/55 (20%)
Blue background indicates that the domain is not in the aligned region.

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