DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and hoxc13a

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_571618.1 Gene:hoxc13a / 58059 ZFINID:ZDB-GENE-000822-4 Length:306 Species:Danio rerio


Alignment Length:398 Identity:84/398 - (21%)
Similarity:130/398 - (32%) Gaps:133/398 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 YPQQMNPQQNHPGAGNSSAGGSGG-------------GAGGSGGVVPSGGTNGGQGSAGAATPGA 72
            |..:.:|.:|:........|.||.             ..|...|.:   .|:.|...:..::|..
Zfish    17 YVYEKSPNENNQNKSQIMEGLSGNCPATHCRELISHPALGRHSGTI---ATHQGSVYSDISSPET 78

  Fly    73 NDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQ-GNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHA 136
            ....||            ||...:...:||.. |||       ....||           .|:|.
Zfish    79 GRQCPA------------PQTSSSASLSYGYPFGNP-------YYGCRL-----------SHSHN 113

  Fly   137 AAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNS 201
            .      ..||.....||.:           |||                   ..:||       
Zfish   114 V------NLQQKPCSYHPAE-----------KYA-------------------ETSSA------- 135

  Fly   202 QSLASPQDLSTRDISPKLSPSSVVESVARSLN--KGVLGGSLAAAAAAAGLNNNHSGSGVSGGP- 263
                    |.|.::|.:....:...|:|.|..  .|.|..|:..:              :|..| 
Zfish   136 --------LPTEELSSRAKEFAFYPSLASSYQAVPGYLDMSVVPS--------------ISVHPE 178

  Fly   264 --GNVNVPM----HSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANG 322
              .:..:||    |.......|.:.....|  .:|:|...|...|.:.|....       |::..
Zfish   179 PRHDALIPMEGYQHWALSNGWDGQVYCSKE--QTQSSHLWKSPFPDVVPLQPE-------VSSYR 234

  Fly   323 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 387
            ..:::|..||:.|..|||||:..::::|:.:|..|:....|:|||:.|||||||:   ||.|..|
Zfish   235 RGRKKRVPYTKIQLKELEKEYAASKFITKDKRRRISATTNLSERQVTIWFQNRRV---KEKKFVS 296

  Fly   388 MNIVPYHM 395
            .:....||
Zfish   297 KSKTNNHM 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 23/55 (42%)
hoxc13aNP_571618.1 HoxA13_N 34..144 CDD:463521 33/193 (17%)
Homeodomain 237..293 CDD:459649 25/58 (43%)

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