DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and hoxb5b

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_571612.2 Gene:hoxb5b / 58052 ZFINID:ZDB-GENE-000823-6 Length:276 Species:Danio rerio


Alignment Length:391 Identity:109/391 - (27%)
Similarity:158/391 - (40%) Gaps:132/391 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGA 72
            |||| |:||.:..||                        .||...:.:.||||...::       
Zfish     1 MSSY-FLNSFSGRYP------------------------NGSDYQLLNYGTNGAMNAS------- 33

  Fly    73 NDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAA 137
                          |.::...| :....|...|    :|.:..:|              .:.|..
Zfish    34 --------------YRDSTSMH-SGSFGYNYNG----IDLSVNRP--------------NNGHFG 65

  Fly   138 AAVAAQQQQQLAQQQHPQQQQQQQQAN--------ISCKYANDPVTPGGSGGGGVSGSNNNNNSA 194
            |.     .......|:|.|:.:.:|::        :||..::.....|.|.....|....|:...
Zfish    66 AV-----GDNSRAFQNPSQETRYRQSSCSLSSPDPLSCATSDTLELKGSSPPSDQSTPTGNSRLT 125

  Fly   195 NSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGV 259
            ||||..|.:.....|....::|.:....:...:.:|:                            
Zfish   126 NSNNLTSSNSTHFADTDETNVSSETEEGAQTTTTSRT---------------------------- 162

  Fly   260 SGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGET 324
                                .:.:|...:.::.|.|    ..|||:|||:::|:.......:|  
Zfish   163 --------------------QKQESVATSTTTPNDG----QTPQIFPWMRKLHISHDMTGPDG-- 201

  Fly   325 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMN 389
            ||.||:|||||||||||||||||||||||||||||||||:|||||||||||||||||::|:.||:
Zfish   202 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMS 266

  Fly   390 I 390
            :
Zfish   267 L 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 52/55 (95%)
hoxb5bNP_571612.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..182 23/175 (13%)
Antp-type hexapeptide 183..188 3/4 (75%)
Homeodomain 202..258 CDD:459649 52/55 (95%)

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