DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Emx1

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001414509.1 Gene:Emx1 / 500235 RGDID:1564002 Length:290 Species:Rattus norvegicus


Alignment Length:275 Identity:71/275 - (25%)
Similarity:108/275 - (39%) Gaps:75/275 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 HAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSN 197
            |:.:|||...             |...::...|....|.|..| |||.|.|.:||:....:|:..
  Rat    26 HSSSAAATMF-------------QPATKRGFTIESLVAKDGGT-GGSPGSGGAGSHPLAVAASEE 76

  Fly   198 NNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGG 262
            .....:|..|.        |..:.::.|...              .||||||.:.:     :.||
  Rat    77 PLRPTALNYPH--------PSAAETAFVSGF--------------PAAAAAGASRS-----LYGG 114

  Fly   263 PGNVNV-----------PMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKR-----V 311
            |..|..           |.|..|    .|.....:...|:|:     ::|...|||:.|     .
  Rat   115 PELVFPEAMNHPALTVHPAHQLG----SSSLQPPHSFFSAQH-----RDPLHFYPWVLRNRFFGH 170

  Fly   312 HLGTSTVNANG---------ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 367
            ....|.|..:|         :.||.||:::..|.|.||:.|..|.|:....|.::|.:|.|:|.|
  Rat   171 RFQASEVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQ 235

  Fly   368 IKIWFQNRRMKWKKE 382
            :|:||||||.|:|::
  Rat   236 VKVWFQNRRTKYKRQ 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 25/55 (45%)
Emx1NP_001414509.1 None

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