DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and Hoxb5

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001178854.1 Gene:Hoxb5 / 497987 RGDID:1562292 Length:269 Species:Rattus norvegicus


Alignment Length:396 Identity:119/396 - (30%)
Similarity:162/396 - (40%) Gaps:149/396 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGA 72
            |||| ||||.:..||...:.|..:.|:|:|.:|                                
  Rat     1 MSSY-FVNSFSGRYPNGPDYQLLNYGSGSSLSG-------------------------------- 32

  Fly    73 NDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAA 137
             .|...||.:|               .:||       .:|..:.     |...:......|   .
  Rat    33 -SYRDPAAMHT---------------GSYG-------YNYNGMD-----LSVNRSSASSSH---F 66

  Fly   138 AAVAAQQQQQLAQQQHPQQQQQQQQANISCKYAND---PVTPGGSGGGGVSGSNNN------NNS 193
            .||....:...|..|.|    :.:||..||..::.   |.|.|.|.|...|.|:.:      ::|
  Rat    67 GAVGESSRAFPASAQEP----RFRQATSSCSLSSPESLPCTNGDSHGAKPSASSPSDQATPASSS 127

  Fly   194 ANSNNNNSQSLAS-PQDLSTRDISPKLS---PSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNH 254
            ||....:..|.:| |::.:::..||.|:   |..:..|.|                         
  Rat   128 ANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTA------------------------- 167

  Fly   255 SGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVN 319
                             :|.|                        ..|||:|||:::|:......
  Rat   168 -----------------APEG------------------------QTPQIFPWMRKLHISHDMTG 191

  Fly   320 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
            .:|  ||.||:|||||||||||||||||||||||||||||||||:|||||||||||||||||::|
  Rat   192 PDG--KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254

  Fly   385 MASMNI 390
            :.||::
  Rat   255 LKSMSL 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 52/55 (95%)
Hoxb5NP_001178854.1 PRK07003 <67..>171 CDD:235906 29/149 (19%)
Homeodomain 195..251 CDD:459649 52/55 (95%)

Return to query results.
Submit another query.