DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Abd-B

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster


Alignment Length:512 Identity:126/512 - (24%)
Similarity:172/512 - (33%) Gaps:216/512 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 QAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQ--------------------------QQQQQQ 130
            |.|:..|.    |......:...||.|:..|||                          ||||||
  Fly     2 QQHHLQQQ----QQQQQQQEQQHLQEQQQHLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQ 62

  Fly   131 QQHAHAA---AAVAAQQQQQ------------------------LAQQQH---PQQQQ--QQQQA 163
            ||||..|   ::|..|||||                        ..||||   |||||  ||||.
  Fly    63 QQHAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQ 127

  Fly   164 NISCKYANDPV--------TPGGSGG-----------GGVSGSNNNNNSANSNNNNSQSLASPQD 209
            ....:.|..||        ||.|...           ..:......|:.|:..::|.|.....|:
  Fly   128 QQQQQLATTPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQTPNSVASGASSNLQQQQQQQN 192

  Fly   210 LS-----TRDISP---KLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLN--------------- 251
            .:     |:.::|   .:|||| |.|....:|..:....|...|..||..               
  Fly   193 AAVAPGQTQIVAPTTASVSPSS-VSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAH 256

  Fly   252 --------NNHSGSG-------------------------------------------------- 258
                    |.|.|||                                                  
  Fly   257 WAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVS 321

  Fly   259 ------VSG-GPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNP----PQIYPWMKRVH 312
                  |.| ...:...|.:|..||.....|::.:.:|:|.....|...|    |.::.|..:| 
  Fly   322 AAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQV- 385

  Fly   313 LGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 377
                      ..:::|..|:::|||||||||.||.|:::::|.|:|..|.|||||:|||||||||
  Fly   386 ----------SVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 440

  Fly   378 KWKK-------------------EHKMASMNIVPYHMGPY-------GHPYHQFDIH 408
            |.||                   .|..|:..   :|.|.:       ||  |...:|
  Fly   441 KNKKNSQRQANQQNNNNNSSSNHNHAQATQQ---HHSGHHLNLSLNMGH--HAAKMH 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 33/52 (63%)
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439759
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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