DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and zfh1

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_733401.3 Gene:zfh1 / 43650 FlyBaseID:FBgn0004606 Length:1206 Species:Drosophila melanogaster


Alignment Length:658 Identity:130/658 - (19%)
Similarity:207/658 - (31%) Gaps:241/658 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATP 70
            |||   ||.:..::......:|:.::|               ||.|:                  
  Fly    29 FAM---QFPSLASTLLHHNQSPKHSNP---------------GSSGI------------------ 57

  Fly    71 GANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAH 135
                         .:.:||.|          |...:..:|..||...:....|...:....:|.|
  Fly    58 -------------QDAHPNQP----------GAAADAFLVKCTQCHKRFPEYQSLSEHIASEHPH 99

  Fly   136 AAAAVAAQQQQQLAQQQHPQQQQQQQQANI---SCKYANDPVTPGGSGGGGVSGSNNNNNSANSN 197
            ......|.|         |:...:.:|:|:   |.:||..|:           .||||:::||:|
  Fly   100 DKLNCGAAQ---------PESDAEDEQSNMSGSSRRYAKSPL-----------ASNNNSSTANAN 144

  Fly   198 NN--NSQSLASPQDL-----STRDISPKLSPSSVVESVARSLNKGVLGGSL-------------- 241
            ||  :|||:.:..:|     |...:||..||.        ||..|.|...|              
  Fly   145 NNSTSSQSMNNNSELAKNHNSANKMSPMCSPG--------SLTPGDLFAQLQHPPPQLPPHLHAQ 201

  Fly   242 -AAAAAAAGLNNNHSGSGVSGGPGNVN-----------------------VPMHSPG-----GGD 277
             .||||:..:.:..:.|    .|....                       :|...||     |.:
  Fly   202 FMAAAASLAMQSARTAS----SPSQQQQQQLQQQQQLQQQQQHQMAMQQLLPPQLPGSNSSVGSN 262

  Fly   278 SDSESD-SGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEK 341
            |..:.| |...:.||..|..|..:  ..||.|:..                 .|:...:.||..:
  Fly   263 SAYDLDLSAPRSTSSPGSTTGDLS--GAYPCMQCT-----------------ASFASREQLEQHE 308

  Fly   342 EFH----------------------FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK---K 381
            :.|                      .|.|  |.:|..|:|......|:.|....::..|:|   |
  Fly   309 QLHSPCGPAAVSNVSQTCRICHKAFANVY--RLQRHMISHDESALLRKFKCKECDKAFKFKHHLK 371

  Fly   382 EHKMASMNIVPYHMG--PYGHPYHQFDIHPSQFAHLSAXDAWHFS-----GTGXRLNQ---LYQE 436
            ||       |..|.|  |:|     .|....:|:| |. .:.|.:     ..| :||.   |.:.
  Fly   372 EH-------VRIHSGEKPFG-----CDNCGKRFSH-SGSFSSHMTSKKCISMGLKLNNNRALLKR 423

  Fly   437 PYQTAAAASAASGYQSQDGG---------------PIG--GGSVGVGGGAGGPGSLANGGSNGSG 484
            ..::..:||:||.....|.|               |:.  .....|.||:..|........|...
  Fly   424 LEKSPGSASSASRRSPSDHGKGKLPEQPSLPGLPHPMSYFASDAQVQGGSAAPAPFPPFHPNYMN 488

  Fly   485 ------PNSLFASAASSSQAPDCIKYPQEFXSQVIIRQQHQQQQDNSMDRNQERDLKLLLETDCE 543
                  |::..|:||..    |...:|... ..:.:....|||::...:..|::......||..|
  Fly   489 AALLAFPHNFMAAAAGL----DPRVHPYSIQRLLQLSAAGQQQREEEREEQQKQQQHDEEETPDE 549

  Fly   544 PDPELQLE 551
            |...:.:|
  Fly   550 PKLVMDIE 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 14/80 (18%)
zfh1NP_733401.3 C2H2 Zn finger 291..311 CDD:275368 4/36 (11%)
C2H2 Zn finger 326..346 CDD:275368 5/21 (24%)
zf-H2C2_2 338..365 CDD:463886 6/26 (23%)
zf-C2H2 355..377 CDD:395048 7/28 (25%)
C2H2 Zn finger 357..377 CDD:275368 6/26 (23%)
zf-H2C2_2 369..391 CDD:463886 9/33 (27%)
Homeodomain 701..756 CDD:459649
C2H2 Zn finger 969..989 CDD:275368
zf-H2C2_2 981..1006 CDD:463886
C2H2 Zn finger 997..1017 CDD:275368
zf-H2C2_2 1009..1034 CDD:463886
C2H2 Zn finger 1025..1042 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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