DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and ro

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:286 Identity:76/286 - (26%)
Similarity:99/286 - (34%) Gaps:108/286 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 SGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGET 324
            :||..|..:|...|.|..||....:|..|..::..                        ...|..
  Fly   151 AGGAANPVLPHAFPAGFPSDPHFSAGFSAFLARRR------------------------RKEGRQ 191

  Fly   325 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMN 389
            :||||:::..|||.||.|||.|.|::|.||.|:|..|.|||.||||||||||.|.|:..|.    
  Fly   192 RRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKA---- 252

  Fly   390 IVPYHMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQSQ- 453
                          |.|.|...|.                                .|:|:.|. 
  Fly   253 --------------QIDQHYRNFV--------------------------------VANGFMSSI 271

  Fly   454 ---------DGGPIGGGSVGVG----GGAGGPGSLANGGSNGSGPNSLFASAASSSQAPDCIKYP 505
                     .||..||.:||||    ..|..|.:|..                .::|..:.|...
  Fly   272 MGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALPK----------------DNTQDANFIDID 320

  Fly   506 QEFXSQVIIRQQHQQQQDNSMDRNQE 531
            .:|..|    ||.:|||.....|.:|
  Fly   321 DQFQRQ----QQQKQQQQQQQQRRRE 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 34/55 (62%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 31/51 (61%)

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