DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and bap

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster


Alignment Length:441 Identity:100/441 - (22%)
Similarity:144/441 - (32%) Gaps:183/441 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 SQSLASP---QDLSTR-----------DISP---KLSPSSVVESVARSLNKGV------LG---- 238
            |:||.:|   .|:.||           |..|   ||.|||..|   ||::|..      ||    
  Fly    17 SKSLTTPFSINDILTRSNPETRRMSSVDSEPEPEKLKPSSDRE---RSISKSPPLCCRDLGLYKL 78

  Fly   239 --------------GSLAAAAAAAGLNN-NHSGSGVSGGP-------------GNVNVPMHSPGG 275
                          ..|...|||...|| :|..:|.|...             ..:..|:.....
  Fly    79 TQPKEIQPSARQPSNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRC 143

  Fly   276 GDSDSESDSGNEAGSS--------QNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYT 332
            ..:||:.||.....||        ..||..:|                         ||.|.:::
  Fly   144 TSNDSDCDSPPPLSSSPSESPLSHDGSGLSRK-------------------------KRSRAAFS 183

  Fly   333 RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK----EHKMASMNI--- 390
            ..|..|||:.|...|||:...|.|:|.:|.|||.|:||||||||.|.|:    :|:.|.:..   
  Fly   184 HAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAALLGASKR 248

  Fly   391 VPYHM-----GPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQE-------------- 436
            ||..:     |            .:.:||::|..|.|  |....|..:|:.              
  Fly   249 VPVQVLVREDG------------STTYAHMAAPGAGH--GLDPALINIYRHQLQLAYGGLPLPQM 299

  Fly   437 -------------------PYQTAAAASAASGYQSQDGGPIGGGSVGVGGGAGGPGSLANGGSNG 482
                               |.|:::..:|:|...|....||             ||::....:..
  Fly   300 QMPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPI-------------PGAVRPQRTPC 351

  Fly   483 SGPNSLFASAASSSQAPDCIKYPQEFXSQVIIRQQHQQQQDNSMDRNQERD 533
            ..||....|..|.:::                  .|...:|  :|.|.|.|
  Fly   352 PSPNGQMMSVESGAES------------------VHSAAED--VDENVEID 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 28/55 (51%)
bapNP_732637.1 Homeodomain 176..232 CDD:459649 28/55 (51%)

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